Package: GiottoUtils 0.2.9

Ruben Dries

GiottoUtils: Giotto Suite Utilities

Utility functions and imports for Giotto Suite.

Authors:Ruben Dries [aut, cre], Jiaji George Chen [aut], Joselyn C. Chávez-Fuentes [aut], Guo-Cheng Yuan [aut], Matthew O'Brien [aut], Edward Ruiz [aut]

GiottoUtils_0.2.9.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GiottoUtils/json (API)

# Install 'GiottoUtils' in R:

install.packages('GiottoUtils', repos = c('https://giotto-suite.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/giotto-suite/giotto/issues

Pkgdown/docs site:https://giotto-suite.github.io

On CRAN:

software technology spatial

3.95 score 3 stars 6 scripts 100 exports 13 dependencies

Last updated from:ca3350c1e4 (on v0.2.9). Checks:7 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	ERROR	196
source / vignettes	OK	329
linux-release	ERROR	329
macos-release	ERROR	126
macos-oldrel	ERROR	139
windows-devel	ERROR	213
windows-release	ERROR	397
windows-oldrel	ERROR	168
wasm-release	OK	270

Exports:%>%%na%%none%%null%ansi_colors assert_dt assert_file assert_giotto assert_numeric box_chars check_github_suite_ver color_blue color_green color_purple color_red color_tag color_teal color_yellow degrees deprecate_param deprecate_soft deprecate_stop deprecate_warn deprecated depth determine_cores dir_manifest dt_dcast_string dt_remove_na dt_set_row_order dt_sort_combine_two_columns dt_to_matrix emacs_version file_extension fread_colmatch from_scipy_sparse fromJSON g_assert g_match_arg get_args get_args_list get_os get_prev_call get_prev_fname getDistinctColors getMonochromeColors getRainbowColors giotto_bpparam giottoNewLog giottoReadLog gstop gwith_awake gwith_options gwith_package gwith_seed handle_errors handle_warnings init_option is_emacs_with_color is_empty_char is_latex_output is_present is_utf8_output keep_awake lapply_flex lifecycle_badge list_element_exists local_seed log_write melt_matrix mixedorder mixedsort new_github_ver_avail package_check pbar print_list py_active_env radians random_seed read_colmatch read_json require_depth str_abbreviate str_bracket str_double_quote str_locate2 str_parenth str_quote str_reformat str_vector suite_install suite_packages time_format to_scipy_sparse use_color_text vmsg with_pbar wrap_msg wrap_txt wrap_txtf

Dependencies:backports checkmate cli data.table gtools jsonlite lifecycle magrittr progressr R.methodsS3 R.oo R.utils rlang

Console Printing

Rendered fromprint_formatting.Rmdusingknitr::rmarkdown

Last update: 2025-05-06
Started: 2023-12-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Radian/degree conversions	degrees radians
Deprecate a parameter	deprecate_param
Generate file manifest list from a directory	dir_manifest
dt_dcast_string	dt_dcast_string
dt_remove_na	dt_remove_na
Set specific data.table row order	dt_set_row_order
dt_sort_combine_two_columns	dt_sort_combine_two_columns
dt_to_matrix	dt_to_matrix
Get file extension	file_extension
getDistinctColors	getDistinctColors
Create color scaling for a single color starting from black	getMonochromeColors
getRainbowColors	getRainbowColors
Giotto Default BiocParallel Param	giotto_bpparam
Create a new Giotto log	giottoNewLog
Read from the last generated log file	giottoReadLog
Module-specific error message	gstop
Error handling	handle_errors
Warning handling	handle_warnings
Initialize an option	init_option
keep_awake	keep_awake
lifecycle badge	lifecycle_badge
Set a seed local to a call	local_seed
Write to log file	log_write
Melt a matrix	melt_matrix
Check if a package has newer github version	new_github_ver_avail
Create a 'progressr' progress tracker.	pbar
Previous calls	get_args get_args_list get_prev_call get_prev_fname prev_call
Pretty print formatting for lists and vectors	print_list
Active python environment	py_active_env
Set a random seed	random_seed
Coerce to AT LEAST specified nesting depth	require_depth
Convert between Matrix and scipy sparse representations	from_scipy_sparse scipy_sparse to_scipy_sparse
Set if	%na% %none% %null% set_if `%na%` `%none%`, `%null%`,
Abbreviate a string	str_abbreviate
String convenience functions	str_bracket str_convenience str_double_quote str_parenth str_quote str_reformat str_vector
Find location of match in string	str_locate2
Giotto Suite GitHub Installation	suite_install
Giotto Suite Packages	suite_packages
Format time for printing	time_format
Verbose message handler	vmsg
With utilities	gwith_awake gwith_options gwith_package gwith_seed with
Track progress while evaluating an R expression	with_pbar
Wrap message	wrap_msg
Wrap text	wrap_txt wrap_txtf